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bngsim 0.11
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bngsim 0.11

Getting started

  • Installation
  • Quickstart

User guide

  • Loading models
  • Running simulations
  • Network-free simulation (NFsim & RuleMonkey)
  • Working with results
  • Events
  • Table functions (TFUN)
  • Solver configuration
  • Code-generated ODE RHS
  • Sensitivity analysis & gradients
  • Steady-state solver
  • Conservation laws & parameter scans
  • Format conversion & interchange (SBML · SED-ML · OMEX)
  • Use with PyBNF

Reference

  • API reference
  • Expression language reference

About & development

  • Architecture
  • Benchmarks & validation
  • Building & contributing
  • Extending bngsim
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